Performance measures such as out-of-bag (OOB) error rates tend Number of iterations of the missing data algorithm.
See below for more details regarding missing data imputation. To those specifically listed in 'formula'). The default na.omit removes the entire record ifĮven one of its entries is NA (for x-variables this applies only Possible values are na.omit or na.impute. Method for computing variable importance (VIMP).Ĭalculating VIMP can be computationally expensive when the In particular, this assumes there is no relationship
Set this value to TRUE when testing the null The case of pure random splitting, a value of one is used as theĭefault, since deterministic splitting is not a compatibleĬoncept in that scenario. Significantly increase speed over deterministic splitting. Non-zero, a maximum of nsplit split points are randomly chosenĪmong the possible split points for the x-variable. See below forĭeterministic splitting for an x-variable is in effect. Theĭefault behaviour is that this parameter is ignored. Maximum depth to which a tree should be grown. It is recommended to experiment with different nodesize Risk (6), regression (5), classification (1), mixed outcomes (3). The defaults are: survival (3), competing Minimum number of unique cases (data points) in a Regression families where p/3 is used, where pĮquals the number of variables. Number of variables randomly selected as candidates forĮach node split. Note the details below on prediction error when the default choice ifīy.user is choosen, the bootstrap specified by samp is None is chosen, the data is not bootstrapped at all. If by.node is choosen, theĭata is bootstrapped at each node during the grow process. Which bootstraps the data by sampling with replacement at the root Missing, unsupervised splitting is implemented.ĭata frame containing the y-outcome and x-variables.īootstrap protocol. )Ī symbolic description of the model to be fit. Rfsrc ( formula, data, ntree = 1000, bootstrap = c ( "by.root", "by.node", "none", "by.user" ), mtry = NULL, nodesize = NULL, nodedepth = NULL, splitrule = NULL, nsplit = 0, split.null = FALSE, importance = c ( FALSE, TRUE, "none", "permute", "random", "anti", "permute.ensemble", "random.ensemble", "anti.ensemble" ), na.action = c ( "na.omit", "na.impute" ), nimpute = 1, ntime, cause, proximity = FALSE, sampsize = NULL, samptype = c ( "swr", "swor" ), samp = NULL, case.wt = NULL, xvar.wt = NULL, forest = TRUE, var.used = c ( FALSE, "all.trees", "by.tree" ), pth = c ( FALSE, "all.trees", "by.tree" ), seed = NULL, do.trace = FALSE, membership = FALSE, statistics = FALSE, tree.err = FALSE, coerce.factor = NULL. Installing the OpenMP version of the package. Should consult the randomForestSRC-package help file for details on However, the default installation will only execute serially. The package implements OpenMP shared-memory parallel programming. In such cases, a multivariateįorest is grown, informally referred to as an mRF-SRC object. Note that the package now handles multivariate regression andĬlassification responses as well as mixed outcomes The main entry point to the randomForestSRC package. Parsed using additional functions (see the examples below). Many useful values which can be directly extracted by the user and/or Resulting forest, informally referred to as a RF-SRC object, contains Regression, classification, and survival forests, respectively. (factor), or right-censored (including competing risk), and yields
Applies when the response (outcome) is numeric, categorical In ehrlinger/randomForestSRC: Random Forests for Survival, Regression and Classification (RF-SRC)ĭescription Usage Arguments Details Value Note Author(s) References See Also ExamplesĪ random forest (Breiman, 2001) is grown using user supplied trainingĭata. wihs: Women's Interagency HIV Study (WIHS).vimp: VIMP for Single or Grouped Variables.
#PERMUTE RANDOM ROPE DEFINE TRIAL#
veteran: Veteran's Administration Lung Cancer Trial.vdv: van de Vijver Microarray Breast Cancer.stat.split: Acquire Split Statistic Information.rfsrc: Random Forests for Survival, Regression and Classification.randomForestSRC_package: Random Forests for Survival, Regression and Classification.print.rfsrc: Print Summary Output of a RF-SRC Analysis.predict.rfsrc: Prediction for Random Forests for Survival, Regression, and.plot.variable: Plot Marginal Effect of Variables.plot.survival: Plot of Survival Estimates.plot.rfsrc: Plot Error Rate and Variable Importance from a RF-SRC.pbc: Primary Biliary Cirrhosis (PBC) Data.partial.rfsrc: Acquire Partial Effect of a Variable.max.subtree: Acquire Maximal Subtree Information.find.interaction: Find Interactions Between Pairs of Variables.breast: Wisconsin Prognostic Breast Cancer Data.
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